Hhugin
Hyperpath Heuristic Enumeration Algorithm Results Availability

Availability

Spencer Krieger and John Kececioglu
January, 2021

Source code

The heuristic and hyperpath enumeration source code, including all datasets, is available on GitHub.
Terms of Use
The hyperpaths source code is free for noncommercial use, and comes with neither warranty nor guarantee. The hyperpaths source code cannot be redistributed in any form without consent of the authors. If you wish to use the hyperpaths source code for commercial purpose, you must first obtain the permission from all authors. All noteworthy uses of the hyperpaths source code should cite the related paper.

Citation
Noteworthy uses of the hyperpath heuristic or hyperpath enumeration algorithm source code should cite the following publication: Spencer Krieger and John Kececioglu, “Heuristic shortest hyperpaths in cell signaling hypergraphs,” Algorithms for Molecular Biology, vol. 17, no. 1, p. 12, 2022. link

Funding
Research supported by the US National Science Foundation through grants IIS-2041613 and CCF-1617192.

Other hypergraph algorithms
Check out our other research on hypergraph algorithms for pathway inference here.

Contact
Spencer Krieger
skrieger@arizona.edu

Department of Computer Science
University of Arizona
754 Gould-Simpson
1040 E. 4th Street
Tucson, AZ 85721, USA

Last Updated: 2022-01-16 15:28:31 -0700